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```
What is the command line and arguments you are using?
>$ ./bar2wig.pl
What is the error generated, if there is one?
> This program will convert bar files to a wig file
>Usage:
> /!\ bam2gff…
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I'm trying to load a bam/bam.bai file through the sources parameter.
The files are located in the same directory/location on the server and according to the developer console, are being downloaded.
Bu…
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Currently, I face two issues with dalliance when trying to add bigbed files.
1) I have an error when a URL parameter already exists in the link. I have managed to fix this issue with the following, …
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Hi,
I am trying to load a bigwig file to the dalliance browser (v0.13dev, chrome). I can load the file from local file system and configure it to use lineplot and looks all nice. But when I put it wi…
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**Original report ([BitBucket issue](https://bitbucket.org/hoffmanlab/segway/issues/22)) by Jay Hesselberth (Bitbucket: [jayhesselberth](https://bitbucket.org/%7Bba6c3099-0fad-4fe3-8aac-9429e99631c1%7…
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_From [epa...@uw.edu](https://code.google.com/u/108766868340988196614/) on August 27, 2012 19:09:35_
Traceback (most recent call last):
File "/net/noble/vol1/home/epaul9/arch/Linux/RHEL6/x86_64/bin…
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Another question from me.
I displayed a BigBed file in dalliance and in general it works fine. However I do not see the strand and score information in the browser. I was hoping, that the features ar…
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## Short use case:
the convention at my institution is to use the individual chromosome's accession (like `NC_000003.11`) as the sequence identifier in BAM files. But I would like to look at the BAM …
bpow updated
10 years ago
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Both genes and transcripts have multiple types (particularly in GENCODE, as defined here at UCSC - http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=172011164&c=chr21&g=wgEncodeGencode).
At present thi…
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Read data directly from VCF files that are compressed and indexed with `bgzf` and `tabix`.
Probably try to make a generic store base class that handles bgzf/tabix data, and that can be inherited from…