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The last few Canto load logs have squawked about FYPO annotation extensions that use pseudogene systematic IDs, e.g.
warning in 9a6cbb66c43cb971: in extension for SPAC16C9.06c:allele-1, can't find fe…
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**Reported by batchelorc on 2008-02-08 12:24 UTC**
Hello,
We don't currently have "base" in SO. Since we have zero-length features, junctions, it seems odd not to have bases in general (though we do…
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are
increased repeat element RNA level
A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any RNA transcribed from repeat elements, such as LTRs, retrotr…
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when we export the GO data we need to make sure that only synonyms are in the synonym column, not like current GAF
Original comment by: ValWood
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I leave the transposon out of the pombe/cerevisiae ortholog table. and they appear to be left out of the human ortholog table too, except for this one?
Tf2-10 (SPBC1E8.04)
(I'm not sure how the othe…
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I typed "lalalala" into the description text field and after switching back an forth to other annotations the entire panel disappeared!!
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Due to multi-mapping, many calls for pseudogenes may be made in the data. It would be nice if there was a good set of non-pseudogenes, currently is there one that exists? I have made my own based on g…
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In an instance using the November Web Apollo release (at NAL/USDA), several pseudogene annotations have an mRNA child feature. This is not biologically sound - and frankly should not be possible (chec…
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If a sequence insertion is made on the exon for a feature, Web Apollo calculates the longest CDS. This is a problem for non-coding features, which are not supposed to have CDS features.
Here is an ex…
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Tell @JoelRichardson
> (1) As I said on Monday, the InterMine model for homologies should be
> generalized to encompass SequenceFeatures (and the data converters, id
> resolvers updated as necessary)…