-
Dear author,
I encountered the following issue upon reading a `mudata` object that was converted from `Seurat`:
```
---------------------------------------------------------------------------
…
-
To extract keywords from free text notes we will be integrating [MedCAT](https://github.com/CogStack/MedCAT).
The goals are as follows:
1. Allow for the training of own models with own vocabularie…
-
- Repository: https://github.com/PMBio/MuDataMAE
Confirm the following by editing each check box to '[x]'
- [x] I understand that by submitting my package to _Bioconductor_,
the package sourc…
-
The main use case supported by mudata is the one with modalities (AnnData objects) having different and distinct feature names (`.var_names`). Examples of such datasets include [multiome](https://www.…
-
Running mu.pp.intersect_obs erroneously introduces NaNs into mdata.obs
Minimal working example:
```
import numpy as np
import muon as mu
def test_for_nans():
assert mdata.obs['batch'].is…
-
Question: what should the API be to write an AnnData or MuData to a store without creating a new group?
Currently the API for writting elements is `write_elem(group, key, value)` which writes value…
-
Hey,
random feedback:
"A noteworthy design choice means is that we do not follow columnar (or “variable major”) data storage as for tidy-data and DataFrames. "
> means is
Think you can omit …
-
Looks like something is going wrong in the conversion of notebooks to pages in the docs:
There are a number of links with this problem in page from `quickstart_mudata.ipynb`
-
It would be good to get the test suite running on CI.
Is there a strong preference for platforms?
-
I got this error from running ac.pl.fragment_histogram(atac, region='chr1:1-2000000')
KeyError Traceback (most recent call last)
in
----> 1 ac.pl.fragment_histogr…