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Hi all,
It seems that you based the "new" RAVEN on version 1.08, but the newest version is actually 1.10. This is because I used some RAVEN functionality while I was at Novo Nordisk and I also fixe…
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I am trying to load an sbml file that has two namespaces, convert into an intermediary structure and then re-write the sbml.
the parser fails to load the html namespace, it only loads the sbml namesp…
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Hello,
I tried downloading matlab version of iJO1366 and iMM904 form bigg website and both had rxnGeneMat field missing. Is there a reason why they have been removes? They were really useful.
Cheers,…
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Loading a SBML Level 3 model (not FBC) that has missing stoichiometry values (as in the example below) does not raise an error, but metabolite stoichiometries are `nan`.
```
…
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Models were loaded using Cobra Toolbox 2.0.5 from .mat files in the latest dump.
It was confirmed that number of genes and metabolites in each model was identical
to that returned by corresponding qu…
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To ensure the long-term viability of exported JSON models, it would be good to define a schema for them. [json-schema](http://json-schema.org/) lets you define these easily, and validators are availab…
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Error:
```
bigg2/static/models/iMM1415.xml:
Malformed XML file: Excessive depth in document: 256 use XML_PARSE_HUGE option, line 92888, column 515
```
XML_PARSE_HUGE does not fix this
@aebrahim @…
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Hey guys,
I'm just curious why zip was chosen as the compression format instead of something gz?
The reason I bring that is is that as of opencobra/cobrapy@128be0c cobrapy can read and write directl…
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Looks like they all have `{{header`
- `MATLAB}} / {{header|Octave`
- `Icon}} and {{header|Unicon`
- `Delphi}}/{{header|Pascal`
- `Delphi}} and {{header|Pascal`
- `Pascal}} and {{header|Object`
- `SQL}…
grant updated
8 years ago
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This means that iAF1260 says it has 1261 genes in the models table.