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# Refactoring Pipeline for `crew` and `apptainer`
> Notes and Checklist for Updating, Started by @kyle-messier
## Design targets for optimal parallelization and updating
### Download
> Re…
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The Justin NERSC jobs are requesting several other parameters which are not available at NERSC.
condor_status slot1@glidein_785106_752406603@x1006c1s6b1n1h0.chn.perlmutter.nersc.gov -af HAS_Singulari…
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### Version of Apptainer
What version of Apptainer (or Singularity) are you using? Run
`apptainer --version` (or `singularity --version`).
```
$ apptainer --version
apptainer version 1.3.3-…
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Hi, does the driver work with apptainer??? is the new version of singularity, right?
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Apptainer containers and also Dockerfiles for Wochenende and haybaler are available here:
https://drive.google.com/drive/folders/1mdSuS1RdYSMQN5SnNuArXZ-1a7GxvNzO?usp=drive_link
TODO - The confi…
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`restraints.angles.as_JSON()` throws error. Steps to reproduce:
```
Apptainer> molprobity.molprobity probe=False coot=False prefix=1hao_mp pickle=True 1hao.cif
Apptainer> mmtbx.python
Python 3.…
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I have added the `fastp` tool to the repository.
@laczkol @zradai Please check whether this is organised according to what you have requested apart from the fact that the `.sif` file has not been m…
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Depending on the target users, auto-download of missing apptainer images could be convenient. However, it trades off the educational aspect of downloading images.
An option suggested during the ENI…
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Build singularity/apptainer images for this pipeline.
See our [BCCDC-PHL/routine-assembly](https://github.com/BCCDC-PHL/routine-assembly) pipeline for an example of how to build apptainer container…
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### Version of Apptainer
What version of Apptainer (or Singularity) are you using? Run
`apptainer --version` (or `singularity --version`).
1.3.2
### Expected behavior
I'm running Appt…