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### NullPointerException reading BCF
I have a VCF with a single variant line in it ([buggy.vcf.txt](https://github.com/samtools/htsjdk/files/2010728/buggy.vcf.txt) _Note that .txt extension should be…
alecw updated
5 years ago
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When using -bcf flag, it causes huge memory leak. I'm using NDK 26.0.10792818 with LLVM 17
![image](https://github.com/DreamSoule/ollvm17/assets/127546925/e48cc9ef-3e41-4d93-810c-e62d7a737607)
ghost updated
10 months ago
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This is a wishlist item. Few tools can do this and I'm guessing it isn't hard to implement. Something similar to the excel output of Solibri would be good.
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Ping @berndhahnebach - I saw in https://github.com/IfcOpenShell/IfcOpenShell/pull/1243/ that you had built support for bimcollabsmartviewfile. Would it be better to:
1. Decouple into a separate li…
Moult updated
3 years ago
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`/cvmfs/main.galaxyproject.org/config/datatypes_conf.xml` has entries:
```
```
but the converters were changed in https://github.com/galaxyproject/galaxy/commit/da5b72a030d8d07c6635…
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Hi Giulio / All,
I tried to get +liftover going on our systems but found location of a couple of files needs to be detailed -- could anybody point to me?
They are 1kGP_high_coverage_Illumina.sit…
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Dear all,
Although I already sorted the VCF file according to the chromosome order of the BAM file AND adjusted the header of the VCF file, I still get this error:
" [E:int32_t cmdCramDemuxlet(int…
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Hi,
I used:
bcftools mpileup -f reference.fa -b bamlist.txt -r chr10 | bcftools call -m -Oz -f GQ -o chr10-bcf.vcf.gz to get all sites vcf
Then
I used command:
pixy --stats pi dxy fst …
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## Question
Hi dev-team!
I really like the library and learning how to use it. However, I am curious about what is the progress to implement annotation_file input/output for (vcf/bcf/..). I not…
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@sem-geologist did HussariX able to read the EDS data from Bruker's Micro-XRF data file (.bcf).