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Thank you for providing this user friendly package. I am facing the problem in few commands as I was generating the different maps for my beadchip data. I have generated CNVs by PennCNV software and t…
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Thank you for this wonderful tool. It's great to have logFC and allele frequency profile in the same plot as previously I have to generate them by myself with lots of efforts. It has lots of advantage…
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so when i give video size and canvas size as a variable of window.innerwidth and window.innerheight
clm trckr not tracking correctly ...
i cant fix video size as it depends on the system we are usin…
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Hi，
when I call CNVs using CNVkit, need to consider sample purity and ploidy to caculate absolute copy number?
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I have shared a script for copywriter that works.
It takes ~2 hours for one sample on a node.
I tested on my samples with ~5kb deletion covering one exon of _IFNGR2_.
I have run both a 20kb and 10k…
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when I run test.py use my dataset,CUDA error: out of memory , how to solve it. My GPU is GTX1080TI 11G,the batch is 1,and chunk size is [1].
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Thanks a lot for updating such a powerful tool continously
in the cnvkit docs, it recommend theta2, and give the command. but in fact the theta2 has someproblems and the author does not recommend usi…
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Dear developer:
i ran inferCNV with the liver cancer single-cell-RNA dataset, and the hepatocyte from tumor sample was select as the obsevation, the hepatocyte from non-cancer liver tissue sample a…
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Sorry if I raise a trivial question as I am quite new to the field of HiC.
I am trying to compare the HiC results from a pair of knockout and control cell line. According to the vignettee, it is rec…
xs254 updated
2 months ago