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Hello,
I would like to use this tool to examine the copy number variation in whole genome sequence, germline, haploid organism data. It would be possible? If so, which parameters should I modify?
…
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## Overview
The lesson management workflow (adding resources to lessons) is being updated to use the similar side panel management UX that we introduced in quizzes in 0.17. This issue is one way that…
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I am trying to study the tumor subclonal populations using the algorithm, phyloWGS, which takes somatic mutation variant allele frequency (ssm_file) and copy number variation (cnv_file) as inputs (htt…
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Copy Number Variation plots are currently hard coded at max value of 8. This is not always sensible!
Ideally the user should be alerted to when a value is greater than 8 and be given the option to va…
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Placeholder for adding a new module with simple functions for calling copy number variations from next-generation sequence data.
Code could be based on what is currently at http://github.com/alimanfo…
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Hello,
I would like to use this tool to examine the copy number variation in whole genome sequence, germline, haploid organism data. It would be possible? If so, which parameters should I modify?
…
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Probably some error happened when ingesting this variant from `clinvar-raw` which wasn't checked for and didn't cause an exception, so the variation descriptor was still added, just with no variant. T…
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Data type names (and other names & metadata) at the GDC can be long, cumbersome to type and somewhat fragile to use (e.g. by containing spaces). Two examples are
"DNA Methylation"
"…
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Good afternoon,
I am trying to download the Copy Number Variation (CNV) from TCGA Legacy for the project TCGA-MESO. However, I am getting an error with both methods "client" and "api". Here's the c…
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Most sources of this type of annotation use terms from the Sequence Ontology as descriptors - e.g. splicing variant, missense variant, nonsense variant, frameshift variant, stop gained. The terms we…