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I called defense-finder run -o Typifier_results/Defensefinder_output/GCA_022437905.1_defensefinder -w 1 Intermediate_files/Genomes/GCA_022437905.1.fna
defense-finder 1.3.0 aborted with the followin…
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Hi all,
what os reference-fna in this case?
$bin/StrainPro-build -r reference-fna -o ref_idx [ref_idx is the output folder for BWT indexes]
Thanks for your help :)
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Hi,
First of all, thank you for developing this amazing tool!
I have encountered a discrepancy in the `inStrain profile` results regarding gene mapping at the same positions between different sa…
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### Report
dbcan_utils fam_abund -bt /data2/jpc/project/project/db_test/output/EscheriaColiK12MG1655_abund/EscheriaColiK12MG1655.depth.txt -i /data2/jpc/project/project/db_test/output/EscheriaColiK12…
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**Snakemake version**
```
$ snakemake --version
8.24.0
```
**Describe the bug**
I am using snakemake (actually via Python) on Linux but find if run in quite mode (``--quiet all``) this doe…
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Hey,
I tried the script on my data set (which is a fragmented bacterial genome extracted from a metagenome).
```bash
Rscript --vanilla plot_BAM_density.R -f ../GCA_012799365.1_ASM1279936v1_ge…
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Hello, thank you for this wonderful tool.
I'm running into a problem where cgmaptools is exiting early, without processing the aligned reads into the CGmap.gz file
This is happening only with so…
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Hi there, thanks again for writing this useful tool!
I can run the CGC Finder without a problem with just fna files as input. However, when I tried providing my own protein sequences and the associ…
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Due to Shader Model 2, "shakezigzag" and "drunk" are having issues in FNA ecfd9b4. They seem to flicker wildly.
Flashing images warning.
[Event 8 - shakezigzag](https://drive.google.com/file/d/17h…
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## Summary:
We are using the MD5 checksum as a proxy for uniqueness in our FASTA format input genomes, where this is literally a primary key in the database. As a consequence we will be frequently …