-
Sorry for this newbie post. I'm not a coder but an avid end-user. Perpetual issues have come up with polyploidization. Ploidy information and genome size are important traits for mapping on trees and …
-
In `proteinortho` file, Roary now adds a `Alg.-Conn.` column. It seems to have every gene in the DB. It screws up the pan genome tree, the clustering, and the alignment views.
Deleting that column…
-
I am performing roary pangenome analysis on hp genomes and I got several annotations for the same gene in the individual genomes. For instance vacA which typically has a single copy in all genomes has…
-
MSID: 98896
Version: 2
Preprint DOI: https://doi.org/10.1101/2024.04.09.588564
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
-
hello,
Thank you for your analysis tools of grand-conv!
however, I don't know how many parameters and what means about these parameters in the grand-conv tools.
I am looking forward to your …
-
Hi! I have question for the miRTop community.
How would you define the "precursor start/end" in case of reads that can be assigned to paralogs (about ~ 15% of described miRNA have multiple copies …
-
I ran Trinity with a reduced dataset of only 1 time point and 3 tissues (because I had an upcoming conference) and the data I received was great. I reran Trinity with all my timepoints and tissues and…
-
mitochondria large subunit
Systematic ID | Gene name | Product description | Budding yeast orthologs | Human orthologs
-- | -- | -- | -- | --
SPAC1610.02c | mrpl1 | mitochondrial ribosomal prot…
-
I was wondering how STAR development will continue with regard to the new GRCh38/hg38 assembly and the existence of ALT contigs ([Reference 1](https://www.biostars.org/p/59126/) [Reference 2](http://w…
-
If I understand HGM (especially Augustus CGP HGM) correctly it returns "orthologs" even for CGPs. So the reference might be missing but the rest of the input genomes might share the annotate gene. Fro…
fbemm updated
6 years ago