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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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General Coding Tips:
1. Avoid the use of hard-coded numbers. It’s best to define your variables under a reasonable name and use them within the rest of your code so that we can understand where the…
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```
[Mon Aug 19 19:32:28 2024]
Job 0: Running bindetect for dox_04_hr_vs_dmso_04_hr
Reason: Missing output files: /vf/users/netterfieldts/MIT_sequencing_data/CCBR-1346/ccbr_tobias_dev/TFBS_dox_04_h…
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Dear Changwei,
I was using autoMito to generate the 2 gfa files (raw and master) of the assembled Malus Domestica genome (as in Demo2) with the code as follows:
~/PMAT-1.5.3/bin/PMAT autoMito -i…
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Hi there Kamil _et al.,_
First off, thanks so much for developing this amazing tool. I am having a pervasive problem with interpreting my smudgeplots - specifically, I am wondering whether they re…
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Hello，after using `xpore dataprep --eventalign eventalign.txt --out_dir dataprep`， it output a datarep file, but it is only 8m in size. When I open data.log, it shows：
Total 1 transcripts - SUCCESSF…
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Hello!
First of all, thank you for sharing IsoLamp with us.
I see that IsoLamp was created for the targeted sequencing, but I have a small newbie question. I was wondering if it would be possibl…
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I have targeted DNA sequencing for a tumour and I do not have any normal samples (matched or even non matched)
I am trying this but I get error
```
Rscript /R/x86_64-pc-linux-gnu-library/4.4/P…
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Hello,
There are two choices in the configuration presents, "DeepVariant" and "DeepVariantWGS", for glnexus_cli (v1.4.1). They have the same description "Joint call DeepVariant whole genome sequencin…
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Hello,
I am running ReLERNN to estimate recombination rate of maize genome(85% TE, 2.2 Gb genome size).
No matter how I adjust windowsize, the model of this group(F2，n=180, depth=5x,Sequencing …