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It seems the chromosome-specific Manhattan plots are missing X-axis basepair markers (say, in Mb). And, Y-axis is missing CNV numbers (it is possible to figure out where the 2 is, but the CNVs are not…
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Hi,
What does this mean?
Error in plot.new() :
could not open file 'Rect_Manhtn./.../_manhattan.jpg'
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Hi Yin,
Thank you for offering a very comprehensive and useful package CMplot , I noticed that I can't define the title when I make a manhattan plot (main option in plot), by default, it's "Manhat…
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Can we get scale right so we can show the hiPHIVE scores on a Manhattan plot so it is obvious one is a standout candidate. Dots could be clickable to take you to detailed results.
We could also show …
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Hiya! I've used updateData(data) to update a heatmap, and now I'm trying to do so with a Manhattan scatter plot. I have a selector that determines which data to plot, and I use a function to generate …
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Hi
Thank you so much for your tutorial for making manhattan-plots using FST values.
I was able to successfully use your scripts with my "sorted_filtered_variants.vcf.gz" file, meaning that I got …
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Hello,
I recently ran Susie fine mapping using tensoQTL's susie.map function. There were several loci where when I looked at the Manhattan plots for the QTL, it seemed like they should have had so…
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HWE (x)
association testing
Ne
parentage
genomic prediction
manhattan plots
SFS
abc
plots with circos
abba/baba
plotting on maps (pop assignments, ect).
assignment (fastStructure calls and …
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Hi!
Thanks for your great work, making circular manhattan plotting both easy and efficient (also enabling miami-like manhattan plots).
A great feature to consider including to the next release…
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Hello,
I am using RAISD to identify selective sweeps in three different populations of an insect and I have been having trouble to get manhattan plots from my analyses. I am wondering if is related…