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Thanks for developing NanoRepeat. From my own testing, it seems to be doing much better than straglr.
However, I find that NanoRepeat doesn't support IUPAC nucleotides in repeat unit but straglr do…
ymcki updated
3 months ago
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Hi
Congratulations on impressive and hugely useful work - both the ProBound model and MotifCentral database!
I am trying to understand how exactly the relative affinities for new sequences are c…
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I have used Concatenator to obtain numbers of nucleotides in a fasta file, and found a bug in the calculation. It seems that for some of the counts, the algorithm has a bug and provides a number that …
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### Description of the bug
Hello there!
I am trying to execute a STAR solo analysis in order to use its outcome for a scvelo run later on. I am using the scRNA data from Singleron's sequencing but I…
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Is there a way to identify the nucleotide coordinates of bins with significant DP?
For example the plotTrack figures show the nucleotides but the plotTest figures only show bins, which given their…
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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.6.1/docs/FAQ.md**:
**Describe the issue:**
I am trying to add the flags --parse_sam_aux_fields=true --use_original_quality…
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Two TET2 variants in cis were obtained: NM_001127208.2:c.1484_1486del and NM_001127208.2:c.1489del
According to HGVS recommendations, these should be described as: NM_001127208.2:c.[1484_1486del;14…
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Hello,
I referred to the method mentioned in https://github.com/BUStools/bustools/issues/49 to construct the barcode whitelist for BD, but the parameters mentioned in that issue `-x 0,0,9,0,21,30,0…
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Hello
Support search for change in 2 nucleotides in codon resulting in AA change. For example, [NP_004324.2:p.Val600Lys](https://reg.genome.network/redmine/projects/registry/genboree_registry/by_ca…
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**Steps to Reproduce**
1. Switch to Macro - Sequence mode
2. Load from file (unzip first) : [Possible to drop selection.zip](https://github.com/epam/ketcher/files/14929441/Possible.to.drop.selecti…