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Just running a test and noticed error with pbmm2 no NM tag. Looked at a few other of my pbmm2 files and none seem to have NM?. These are from a few years ago. Its running ok with minimap bams.
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Dear Dr. Yu
When running TEMP2 with a BAM file generated from my own mapping, I encountered a problem. It's important to note that running the test data went very smoothly.
**My command**
TEMP2 i…
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Hello, I'm trying to use `whathap haplotag` to phase a BAM file from a phased VCF and I'm getting an error suggesting that the BAM file is incorrectly formatted:
```
Found 2 sample(s) in input VCF
…
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## Before proceeding...
- [x ] My CLIs meet the [minimum version requirements](https://github.com/PatrickF1/fzf.fish#installation)
- [ x] I read through the [troubleshooting guide](https://github.…
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## Bug description
Lua Error pops up after zooming out on the map. Does not do anything initially but as soon as you zoom out it just pops up lua error
Message: ...erface/AddOns/Questie/…
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```bash
$ samtools --version
samtools 1.13
Using htslib 1.13
$ uname -sr
Linux 5.4.0-1052-gcp
$ uname -m
x86_64
$ gcc --version
gcc (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
Copyright (C) 20…
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----------------------
- Plugin Name: EmmyLua
- Plugin Version: 1.3.7.2-IDEA222
- OS Name: Windows 10
- Java Version: 17.0.5
- App Name: Rider
- App Full Name: JetBrains Rider
- App Version name: J…
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data type: `Targeted`
command:
`pypgx create-input-vcf --max-depth 5000 --assembly GRCh38 out.vcf.gz ../ref_hg38/part.fa Sample_JZ23.bam`
error info:
```
Traceback (most recent call last):…
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## Abstract
I think TabSessionManager should be recommended by the addon in a way that the user reads that because otherwise people can lose all their tabs, which happened many tabs looking throu…
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- Julia Version:
- Plugin Name: Julia
- Plugin Version: 0.4.2
- OS Name: Mac OS X
- Java Version: 11.0.15
- App Name: IDEA
- App Full Name: IntelliJ IDEA
- App Version name:…