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I want to use my newly assembled bacterial genomes with some reference genomes to generate a phylogeny tree. I found your tool very interesting.
I am using a singularity container to run GToTree i…
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Hello!
Since our HPC does not work very well with conda, I tried to convert the hadge process-specific conda environments into Docker/Singularity containers and then run the workflow via Singularit…
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Although no user has requested this, it would be interesting and useful to build containers for Docker and Singularity for svSolver executables. Singularity is supported on many HPC clusters including…
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hey label-schema team! I'm one of the developers for Singularity (http://singularity.lbl.gov) which is a container that is primarily for HPC and science (doesn't have security risks of Docker). I've s…
vsoch updated
6 years ago
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Should we also push our singularity containers to github?
https://github.com/singularityhub/github-ci
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While trying to run an `e4s-cl init` I received an error that said it was an e4s-cl bug, and to report the contents of a debug file on github. Below is the pasted contents of the file:
```
$ cat /h…
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## Summary
This bug is related to [issue #176](https://github.com/PennLINC/babs/issues/176 ).
When babs-init is run, it does a test to datalad get an example subject from each BIDS dataset. My sub…
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### Why it needs to get done
For the DSS we want to execute containers. As an alternative to Docker Singularity containers come into play.
### What needs to get done
- Find out how to run GPU workl…
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Hi there,
The way we usually run bioinformatics software in our centre is to use Docker containers from the Biocontainers project, via singularity/apptainer.
The Biocontainers project automatica…
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### Description of the bug
Singularity container retrieval failed when trying to download the nf-core/sarek pipeline. While making image from oci registry I got an error fetching image to cache and f…