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Thus far, most phenotype ontologies have focused on abnormal phenotypes, often refined with qualitative assertions about whether an abnormality involves higher or lower levels of some phenotypic quali…
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I get this exception in v5.5.0-beta-9, when trying to load the plant-trait-ontology, from a local git repo cloned from github (https://github.com/Planteome/plant-trait-ontology/) as of a certain commi…
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### System information
- Ubuntu 22.04
- 1.0.5
- Cloud
### Description of the Issue
The `format` command with `--generate-metadata` crashes for a filename that doesn't contain `GCST`, even if the …
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Hi CALIBER team,
This is less an issue and more of a feature request - I was just wondering if there were any plans to extend the metadata about each CALIBER phenotyping algorithms with ontology te…
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The Planteome (http://planteome.org/) is a publicly accessible suite of reference ontologies and annotated plant genomics data. In addition, we host a number of species-specific trait ontologies from…
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suggestions of children for fruit quality trait [(TO:0002728](http://purl.obolibrary.org/obo/%28TO_0002728))
- Postharvest fruit quality trait - After-harvest quality [(SP:0000197](http://purl.obolibr…
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proposed new child under quality trait [(TO:0000597](http://purl.obolibrary.org/obo/%28TO_0000597))
- leaf quality trait - The quality assessment of the leaf [(PO:0009025](http://purl.obolibrary.org/o…
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Proposed new term titratable acid content
suggested parent: fruit flavor trait [(TO:0002694](http://purl.obolibrary.org/obo/%28TO_0002694))
proposed relations:
is_a metabolite content related trait…
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I'd like to work on using the KnowledgeBase's API to query a set of traits and return an ontology that can then be used to build discrete character models (as in Sergei Tarasov's recent [preprint)](ht…
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Ontologies that are not currently marked with a URI for biological objects
- [x] FMA (Foundational Model of Anatomy)
- [x] PCO (Population and Community Ontology)
- [ ] TAIR (The Arabidopsis Info…