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Maybe add something more recent?
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Dear njaupan,
Is there an option in ecc_finder that allows users to specify the max length of eccDNA to detect? I wonder if I can use it to identify long eccDNA with the size of 1-3 Mb. Currently w…
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This is the plan of the figure panels (main and supplemental) to be included in the developmental paper, following our last data analysis in which we replaced the adult RNA-seq data generated in-house…
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**Describe the issue**
We recently updated the RepeatModeler version used on our HPC cluster from 2.0.1 to 2.0.4 and shortly after to 2.0.5. When running RepeatModeler and RepeatMasker on very simi…
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Hi,
Is anyone working on these below workflows?
* [Just Annotate My Genome (JAMg)](http://jamg.sourceforge.net/)
* [Just_Annotate_My_proteins (JAMp)](http://jamps.sourceforge.net)
Some of the st…
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### Description of the bug
Hi,
I am trying to install this pipeline using conda. The command used is mentioned below. Conda is expecting an environment.yml file to be present inside "raredisease/…
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Hi,
I would like to use tamgram to identify the location of transposable elements in Drosophila, however when I run tangram_scan I get a segmentation fault. I suspect that tangram_bam is not working…
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Various settings will be tested, as choosing the appropriate kmer size is not always straightforward.
**Pros of small kmer**
- Can reduce memory requirements and computation time.
- Can help pres…
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Hello. I installed gffread 0.12.1 through anaconda and used to convert a GFF3 file into GTF format.
The file I used is the gff3 annotation file from Araport11:
[https://www.arabidopsis.org/download_…
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AliTV has Excellent interactive visualization capabilities. However, I am not sure how to generate the .yml file. It would be great if I could just upload my gff files to show the annotations.
For la…