-
HI ,
I downloaded the last version of the bulk of openSNP.
It's actually 4700 files of raw data from various companies.
I tested your library with all the openSNP file and they're is some file wi…
-
We can use hypothesis-vcf to generate VCF files, convert to Zarr with vcf2zarr, then convert back using vcztools - and check that they are equivalent.
-
Hi,
I'm trying to replicate supplementary data 1 on a single chromosome. I have a few questions regarding the post processing of methphaser results.
1) I believe the phase blocks in the output…
-
Hi Wai,
All generated VCF files should be compatible with the VCF format 4.1.
In addition I would also filter out all the calls that are below 20bp since they create a lot of noise in the merged VCF …
-
[GA00_AO2_BB1_01_annotsv_new.bed.zip](https://github.com/user-attachments/files/17144001/GA00_AO2_BB1_01_annotsv_new.bed.zip)
@lgmgeo Hello, I am trying to use the web version of annotsv, and I appr…
lpsyy updated
1 month ago
-
Hi,
I am trying to run step 2 on soprano-app to annotate my VCF file. However, I get this error:
 of the HG002 sample. Specifi…
-
Dear author, hello. I encountered an issue while running selscan: ERROR: Variant physical position must be monotonically increasing.2__34 34 appears after 1__230155 230155
My processing pro…
-
### Is your feature request related to a problem? Please describe.
I'm a new user and have downloaded the large volume of `vcf`-type files required to act as the reference.
### Describe the sol…
-
I have a folder with ~12 vcf files from human genome ONT data that I want to plot, but I get this error: ValueError: Image size of 1358933x7111 pixels is too large. It must be less than 2^16 in each d…