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Looking at the mixer fit-sequence options I have been thinking what fitting options to choose.
Here is a list of 3 items. It would be helpful if you could try to help me understand these options etc.…
gnarw updated
4 years ago
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I am hoping to fit a multiple trait Bayesian genomic prediction model using the JWAS package. I've managed to run the tutorials without any issues. However, when I apply the model to my own data, I …
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Hello Oleksandr-
@ofrei I am trying to make use of this interesting simulation software. Trying to simulate 4 traits based on the rg b/w 4 of them. Will it be possible to work this out using this? …
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For each season x date x trait, compute heritability and plot with date on the x axis and repeatability on the y axis:
Sample code:
```r
library(heritability)
h2
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LDpred uses `h2` computed using LD-score regression's method for inference, and it has an important role. I have been playing with different values of `--N` for a CAD meta-analysis and the `h2` I get …
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Hi,
I would like to confirm a part of the results generated in mets.
When running as below
< twinlm(bmi ~ 1, data=d,......) >
In the output (type=ae or ace ...)
< variance decomposition
A 0…
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Hi bvilhjal
I am trying to run ldpred twice, with the same reference and validation panel, but with different summary statistics based on different populations.
For one set of summary statistic…
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Hi,
I am testing a sample dataset that has the same format as the oat dataset as demonstrated. This was a RCBD design with 3 replicates
str(dataset)
'data.frame': 791 obs. of 4 variables:
…
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Thank you for your efforts to make this software easy to use and publicly available.
For the common factor GWAS (https://github.com/MichelNivard/GenomicSEM/wiki/4.-Common-Factor-GWAS), the document…
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Hi Bjarni J. Vilhja´lmsson,
Thanks much for your support of LDpred.
Can you please help us on one thing that is very hard for us to understand: LDpred works well for GWAS summary estimated from…