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Hi,
I have a question regarding some experiments like this one:
https://support.10xgenomics.com/single-cell-atac/datasets/1.0.1/atac_v1_hgmm_500
which its reads are a combination of human and mus…
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Hi scDesign3 developers,
Thank you for maintaining the amazing tool!
When I was simulating the data from https://www.10xgenomics.com/resources/datasets/mouse-brain-serial-section-2-sagittal-anter…
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The answer here could simply be 'no' 😄 but as this question came up recently for me, and it is one I've seen mentioned on the `nf-core/scrna` slack, I figured I'd raise it here to get your thoughts. …
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Hi,
I am trying to create the snap file like this example:
https://github.com/r3fang/SnapATAC/blob/master/examples/10X_P50/README.md
but for samples that are mixture of mouse and human data like:…
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Hi, I got following error message:
`02:20:12 [WARN] Variant at chr7:148807387 has invalid alternative characters. This record will be ignored.`
My vcf file contains following lines:
```
chr7…
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Hello,
I am using 10X datasets with Cellranger and I want to use Sierra for AS analysis. I am using Ensembl GRCh38 genome and GTF files and I build my own reference. I used the tutorial from 10X Web…
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## Description
Hello, Squidpy seems not to read the newly released Xenium 5K data (https://www.10xgenomics.com/datasets/preview-data-xenium-prime-gene-expression) correctly. In particular, the fu…
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Hi @pmarks!
It seems this repo has no releases from the last year, while there are still several inflight commits as well as pending issues/PRs. I'm willing to help in maintaining and releasing thi…
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I'm following the "[read the docks](https://cumulus.readthedocs.io/en/stable/cellranger/fixed_rna_profiling.html)" input protocol for the CSV file and other Terra inputs and am receiving an error rela…
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Hey guys!
I am running TRUST4 on 10xGenomics RNAseq data. Especially, we make use of the AIRR file for our post-processing analysis.
For a QC protocol, we require the `cell_ids`, however I see tha…
mapo9 updated
8 months ago