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### Description of the bug
sample.csv:
```
sample,fastq_1,fastq_2,feature_type
NPC_Astro_Diff_aBeta,NovaSeqX_20240927_LH00181_0041_B22TF5VLT3_bcl-convert_KL_NPC_Astro_Diff_20240916_scRNA_10X_Flex_NP…
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Thank you for providing this fascinating tool.
I do have a question regarding its application. Is the STAR Solo tool only applicable for human and mouse cells, as it is the case with Cell Ranger? I …
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HI I am trying to run cell-ranger on > 24 samples,
attached are my batch file and the library file and the script and following is the error
File "./count.py", line 78
def _run(library:…
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Hi,
Using Seurat, in their variable gene function I've had some success using the `equal_frequency` option, where each bin contains an equal number of genes. Would it possible to implement this opt…
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Consider this table, where very long text data has been split over multiple lines for editing reasons, and all the cells of the row are rowspanned into the above row..
````
| Race | Multi-clas…
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Annika and I want to speed up the processing of single-cell multiome datasets.
So I may need to install 10X pipeline on SCG.
To check out what is already there, I have to:
1. Talk to Ramesh
2.…
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Hi,
Thanks for developing a subset-bam software. I would like to split the BAM file (from cell ranger) for each individual cell barcode, which is provided in the filtered_feature matrix folder (bar…
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### Name of the tool
CellRanger ARC
### Tool homepage
https://support.10xgenomics.com/single-cell-multiome-atac-gex/software/pipelines/latest/what-is-cell-ranger-arc
### Tool description
Add comp…
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Hi,
First of all thank you for coming up with such a critical procedure that would effect almost all single cell study.
Background:
We implemented 10x to our in-house method that gives read out…
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Hi, I have merged filtered_contig_annotations.csv generated by "cell ranger aggr" commands. This file contains metadata column. So, can I split the CSV file by metadata after repLoad?