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Hi Markus,
I have a question related to PureCN output. When I look at the multiplicity of the mutations, all somatic mutations that have CCF less than 0.9 are a multiplicity of 1, and higher CCF than…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/danro9685/ASCETIC
Confirm the following by editin…
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Hi @AntonioDeFalco
SCEVAN is very convenient and quick. But there is no clone tree plot for each sample during multisample analysis. Can this function be added later? Maybe I didn't find the right…
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### To triage
- [x] [The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages.](https://contribute.data.humancellatlas.org/projects/detail?uuid=4aee283b-ce74-4da6-ade5-d3d…
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Hi,
I am intending to use pairtree to generate clonal evolution tress for bladder cancer samples in multiple patients. I am confused about the var_read_prob values that are needed, which indicate t…
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Dear Ha X. Dang,
I am analysing four different spatial samples from cancer. I could reach to run clonevo until the function called _infer.clonal.models_ and could not find any consensus models acr…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/sandmanns/clevRvis
Confirm the following by editi…
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Hi Chrisamiller,
I came accorss an error like "Error in if (yst > 85 | yst < 15) { : missing value where TRUE/FALSE needed ", when importing clonevol results to fishplot. Would you help me to fix …
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I'm unable to implement selection (fitness) using `RandomSelection`:
```
matingScheme=sim.RandomSelection(ops=[
sim.ParentsTagger(infoFields='parent_idx'),
sim.MapSelector(lo…
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Please fill out the template below and click "submit" to request a trait dataset to the Open Traits Network. Please allow for some time for @open-traits-network/editors to review your submission.
`…