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I am using getMeth to pull the M matrix directly, but I only get a matrix with no labels for the rows. How do I figure out which CpGs are which rows? Are they in order?
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I am trying to use methylQA bismark mode. I am mostly interested in the .report file that comes out of it. I wonder if you could guide me in how to produce the input files needed for it:
- bam files: …
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I have some questions about the epigenetic data for v2 primates assembly.
For example, at https://genomeark.s3.amazonaws.com/index.html?prefix=species/Pan_paniscus/mPanPan1/assembly_curated/epi/ th…
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Hello:
How should I solve this error:
```r
library(GenomicRanges)
library(genomation)
cpg.file=system.file("extdata", "cpgi.hg18.bed.txt",
package = "m…
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```
W7 Pro
Набор данных OSM имеет файл *.cpg где указана
кодировка.
http://gis-lab.info/projects/osm_shp.html
При копировании и вырезании этот файл
переносится.
Когда выполняется проецирование о…
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@davidamichelson @jsaintlauren
As you know, a lot of BHSE entries have for "ancient versions" just a note for each language saying "cf. CPG." I've already included the URI for our bibl record for CPG…
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The iteration in the `ArrayList` function next, triggers a `ConcurrentModificationException`. This apparently happens in:
`https://github.com/Fraunhofer-AISEC/cpg/blob/f19388e118d1c6ad3711222ef0a55e…
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I followed this guide [Remote Copy with Peer Persistence Synchronous Replication Parameters](https://scod.hpedev.io/container_storage_provider/hpe_alletra_storage_mp/index.html#remote_copy_with_peer_p…
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Recently Paul (VCGS) flagged that Mito variants are coming through into Exome AIP reports
The final line of `gs://cpg-common-main/references/hg38/v0/exome_calling_regions.v1.interval_list`
is `chr…
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When I trun dcpg_data.py it gives thousands of warnings "dcpg_data.py:152: UserWarning: No CpG site at position 47655381! "
I think the reason is that those CpG sites are on the negative strand. I…