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Hi @sqjin
Couple of quick questions.
Do we need to do multiple testing to obtain adjusted pvalues / the p-value reported with cellchat identifications of interactions in the individual dataset…
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Hi!
I mapped my reads of different human samples to the reference genome using the STAR default parameters and subsequently I counted the reads using RSEM and I performed the differential expressi…
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Hi @sqjin
Congrats on this this great library.
I am running some of the functions on my datasets and I came across an interesting observation.
After DGE analysis, I am finding the same pair of L…
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Hello,
I've been using the differential transcript expression analysis well, until recently I've been trying with a different dataset and I keep getting an error "names" attribute[2] must be the s…
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13th-17th March, proposed schedule:
### Day 1
- Introduction to NGS analysis methods
- Introduction to R and Unix
- Practical: Unix
- Practical: R
### Day 2
- Graphics in R
- Alignment basics and RNAs…
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Study without biological replicate, CIRI_DE generates DS_score.
In CIRI_DE_replicate output, only DE was generated. How can we get DS_score using CIRI_DE_replicate?
Thanks
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Hi. I have used NATMI on a single cell RNA sequencing dataset to perform a differential cell communication analysis between a data set in two conditions and one of the files that is output is "DOWN-re…
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We are currently utilizing CellxGene VM (https://github.com/Novartis/cellxgene-gateway) to host a substantial spatial transcriptomic dataset comprising roughly 16 million cells. However, we are facing…
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### Description of the bug
Hi,
I encountered an issue while running the pipeline with data generated using the nf-core/RNAseq pipeline. Specifically, when attempting to run the gprofiler analysis wi…
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Hi fanyue,
Thank you for developing this excellent package.
Given that many datasets lack coverage of actual timepoints, I'm unsure if this method can effectively identify temporal genes along th…