-
Dear devs,
I was looking for more efficient way to concatenate fastq files and was happy to find this efficient implementation.
Not sure if this is a bug or just wrong usage by me, but I decided to…
-
Have run the test packaged with the software successfully. But when I try to run my own data, I get the following error:
python create_inference_graphs.py --reads All+RatQ3.fastq --gfa raven-unpoli…
-
Hi, I am running the paleomix pipleline, but I got an Error from the first step, could you share your help? Thank you very much.
Trimming paired end reads ...
Opening FASTQ file 'data/sample_raw_1…
-
I performed buttery-eel basecalling on the slow5 file and got the fastq file. I want to detect m6A modification. Can I extract information from the slow5 file and the resulting fastq file to build a m…
-
Hi,
I found weired things about pychopper behavior on the same run but different basecalling mode (dorado basecall HAC vs SUP). I test this with 250k reads, in the HAC mode, 238488 (95%) could find…
-
Please describe the issue:
When running Dorado demux with default settings (without the --emit-fastq flag), the process gets stuck after processing approximately 7000 reads(Tried with multiple datase…
-
Hi, @hasindu2008
When I use f5c to eventalign RNA004 data, the system popped up this bug and crashed.
Here are a few screenshots.
Here is my code:
`for i in input; do`
`echo $i`
`mkdir -p…
-
Hello there,
I am posting this issue beacuse after running atlas qc on my samples, I find a new folder called Intermediate, that contains qc, which in turn contains decontamination. Inside decontam…
-
As a user assigned to the pipeline FASTQ,
I want one case per sample,
So that the order-view in Trailblazer would tell me if a sample failed on amount of reads.
# Acceptance Criteria
-…
-
Hi there!
Thanks again for the active development.
I have a problem with the validateFQ in the version 3.0.0. I have the error:
```
Error in rule validateFQ:
jobid: 26
input: /scratch/hhu/…