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Hello Dr. Cheng and community,
I recently used hifiasm to assemble a allotetraploidy genome, and my command is `hifiasm -o out -t60 --primary --h1 hic_1.fq.gz --h2 hic_2.fq.gz ccs.fastq.gz`. HiFias…
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## Description
It is not possible to order re-delivery of raw data from the order portal. Placing a new order with data delivery set at "Raw sequencing data (fastq)" results in the new order ticket…
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### Description of feature
Hi, I couldn't run the pipeline on some smart-seq datasets which contains only single-end fastq files. I tried with two different samplesheets and get an error that fastq_2…
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Hi,
I found some weird behaviour when running paired-end data.
To test some stuff, I created some simulated datasets where I know all the parameters like repertoire size, size of each clonotype, V…
mapo9 updated
3 weeks ago
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I am reaching out to seek clarification regarding the pre-processing steps required before using the STAR-fusion software. Specifically, I would like to know whether I need to perform quality control …
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I am running **ert/bwa-mem2 mem** and I have a weird segmentation error occurring, which is file specific to the fasta file and happens in about 1/4 of my assembled genomes. It is very annoying as it …
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Based on discussions in the 3/15/23 NMDC sync meeting the workflows team will take over creation of the omics_processing_set records for ingest of JGI data using GOLD. In order to tell these records a…
aclum updated
3 months ago
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Dear
I am trying to do allelic analysis Hic data getting same error G2 is mapping reads are zero and iced normalisation step getting error. I used bellow command to run analysis. non allelic analysi…
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conda create -n optitype python=2.7.3
conda install -n optitype -c bioconda optitype
conda activate optitype
bam=/home/ry/analysis/data/optitype/bam
raw=/home/ry/analysis/data/optitype/raw
fastq=…
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### Description of the bug
I just want to use the pipeline for QC'ing my nanopore data, but it prematurely terminates after the initial step of the pipeline:
```bash
[70/93224f] process > NFCOR…