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SSAs are "embarrassingly" parallel on the simulation level, meaning that N independent simulations can be run at the same time. I don't know how high N is in practice for the users of `JumpProcesses` …
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Add a method to the set of rational numbers to produce an iterator for the Calkin-Wilf sequence, an explicit ordering of the positive rationals with some interesting features. Background:
- https:/…
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# Overview
I have found some bugs occurring when I try to run `scripts/f2grfn_standalone.py` in the `dssat_pet` branch after pulling @pratikbhd's changes to support the updated `decision` nodes. @pra…
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Might be useful to have an issue to add useful papers as we come across them.
The Wolf Am Nat one looks pretty useful.
Might also be some useful stuff in this meta-analysis: http://beheco.oxford…
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```
from roadrunner import RoadRunner
sbml_file = "AModel.sbml"
r = RoadRunner(sbml_file)
integrators = ('cvode', 'gillespie', 'rk4', 'rk45', 'euler')
data = {}
for integrator in integrators…
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Dear Samuel,
Togheter with other students I'm currently trying to reproduce and extend part of your study. We're however currently unable to solve a series of issues related to the Spreading_CR pac…
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Oh boy oh boy. We have slacked a little bit on citation information. It should all be here:
http://juliadiffeq.org/citing.html
https://github.com/JuliaDiffEq/juliadiffeq.github.io/blob/master/citi…
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Hi all,
I have a distrib model I want to simulate. A parameter initial assignment is sampled via an uniform distribution.
I have to set the seed for the model to be reproducible.
Unfortunately t…
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Here are the most interesting of the faster-Python implementations. Caveat emptor. Obviously our requirements include a robust implementation with NumPy and Linux compatibility.
- [Numba](http://nu…
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Hello - I have a slight mis-undestanding on what can be made parallel in Tellerium. I would like to mark this a question.
Let me start from a simple setting. I have a simple gillespie simulation f…