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Human parvovirus B19, Influenza A virus, and many viruses are classified as "no rank" in the NCBI database. This is problematic because we filter the KrakenUniq output to only keep the "species" level…
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Convert dataset to a single CSV with columns `seq` and `label`, where `label = H | I | C` for HIV, Influenza and COVID respectively.
Truncate each sequence to be 8k nucleotides long
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**Actual Behavior:**
- When I query the latest covidcast `hhs` `confirmed_admissions_influenza_1d` data, it has mismatches with both the latest version of the [upstream "timeseries" data set](…
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以下的MWE复现我的问题：
```
\documentclass{ctexart}
\usepackage[highlightmarkup=background,commentmarkup=margin]{changes}
\definechangesauthor[name={Per cusse}, color=orange]{per}
%\sethighlightmarkup{…
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I'm trying to install VIP on mac (OS X El Capitan, version 10.11.16).
For this to work, I had to change the installer file db_installer.sh command for the md5 checks to md5 -r "md5" and this started…
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I'm in the middle of making an [IRMA](https://doi.org/10.1186/s12864-016-3030-6) module for Adenoviruses. I came across your repo today and thought it would be useful for that purpose (I'm definitely …
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* [The European Surveillance System (TESSy)](https://www.ecdc.europa.eu/en/publications-data/european-surveillance-system-tessy)
* [Weekly influenza update, week 52, December 2017](https://www.ecdc…
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From Trac, @weese is this still an issue?
In the case of paired reads where one mate aligns and the other does not, the SAM output of the FragmentStore is broken: only the aligned mate is written to …
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I tried to run the package as documented in the codeToRun and got the following error when trying to run `prepareShinyData`
```
> execute(
+ connectionDetails = connectionDetails,
+ cdmD…
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ping: @Starnite!
Gonna leave a list here for you to consider. I have an inkling of the necessary tools to get these done. I've also ranked them (roughly) by what I think the difficulty would be. T…