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By reading the targets from https://github.com/rrlove/compkaryo/tree/master/compkaryo we can very simply karyotype samples based on tagging SNPs.
It would be handy to have a built-in method, so I …
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## 🚀 Feature
A way to write `Labels.properties` to a file. I think CSV would be a minimal format to support and sufficient for this issue.
## Motivation
`Labels.properties` may be used to sto…
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Hi,
I created a python virtual environment with python3.11, and I installed
biopython
circos
pandas
numpy
With pip install.
I am running the program like this:
p2c.py H…
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### What happened?
[reporter's note: IIRC, exit code 137 indicates that the "container" in which the worker JVM was executing exceeded memory limits. It seems likely that whole stage codegen has eith…
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Hi Xiaotao,
Wanted to update you with running EgaleC on our own datasets.
I used ICE normalized data (output from cooler with balance) and CNV normalized data (sequentially run neoloopfinder c…
Bo-UT updated
2 years ago
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Hi,
@rstraver,
I'm getting a high negative z-score of -54.3 in chr5 for a sample of pregnant women.
[NA-349plot_z.pdf](https://github.com/VUmcCGP/wisecondor/files/3684597/NA-349plot_z.pdf)
Is that…
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Hi
I have had successful runs with mummer2circos but this time it fails with the following error:
```
Traceback (most recent call last):
File "/home/subudhak/miniconda3/envs/mummercircos/bin…
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Dear dev @gosianow
I am trying to run DRIMSeq for a experiment with 2 experimental groups and 2 batches, as in the following design matrix:
```{r}
> design_full
(Intercept) …
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Hello, I would like to inquire about the input data format. When preparing the config.SFs file, I observed that it is possible to input non-chromosomal data. Consequently, I prepared two datasets.
Th…
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Hello,
I am generating a synteny plot using
```
python -m jcvi.graphics.karyotype --figsize=10x13 --chrstyle=rect seqids layout
```
It works really well. The chromosomes I am plotting have ma…