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Hi, I tried today to start a run with the MAG version 3.2.1 but I can an error which is unexpected.
this is the error:
```
WARN: Access to undefined parameter `genome` -- Initialise it to a default v…
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This is the validation dataset.
```
Execution cancelled -- Finishing pending tasks before exit
-[nf-core/pathogensurveillance] Pipeline completed with errors-
ERROR ~ Error executing process > 'PATH…
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Hi there! I'm using nf-core/hic through a docker profile and need to edit the nextflow.config file to change the max resources my computer has available. Any advice on how to do so? I've tried creatin…
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There are several ways that the language server might be useful for checking `.nf.test` files, which is now the testing standard for nf-core and several nextflow pipelines.
Some common things that…
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There is a few problems / hurdles / efficiency issues using `nf-core` right now. Let's use this issue to list them and discuss.
- [ ] `git-remote` and `branch` in commands to target `nf-scil`
- [ …
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If provide genome by fasta and gtf, workflow will try to generate genome index and gene bed if they are not provided. It works fine when fasta and gtf are uncompressed. However, if any one of fasta an…
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Kernel: 6.12.0-rc7
BORE: 5.7.3
```
[ 906.235863] ------------[ cut here ]------------
[ 906.235867] rq->clock_update_flags < RQCF_ACT_SKIP
[ 906.235871] WARNING: CPU: 0 PID: 16856 at kernel/…
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Since a lot of work has gone into the nf-core/airrflow, we could maybe update the chapter 'AIRR Rearrangement TSV Interoperability Example' to this?
Maybe Gisela Gabernet can be convinced to write …
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If HifiCNV should be removed, don't forget about #63
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Reg eager.qmd
The figure could use a caption; particularly eplaining what the green and white bits are (which honestly I couldn't find on any of the nf-core/eager websites :P ):
[nf-core/eager pipel…