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I would like to ask if it is a way to calculate the B1map (using the EPI method) and the MPM maps without using neither the SPM batch or SPM batch-derived script. Or, in other words, if there are spec…
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These workflows need updating. May also be a good opportunity to add targeted unit tests for different input file formats (NIfTI, CIFTI, TSV) and docstrings.
### Resampling to the surface
- [x] …
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Slicer 4.10.0.
After importing 4D nifti using multi-volume importer, multi-volume can only be saved as nrrd/nhdr (attached screenshot), not other format.
What I was trying to do is to import 4D n…
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Hi - My goal is to view a local nifti file (.nii) on the neuroglancer demo appspot. So, I made a directory and placed the file in it, then ran [cors_webserver.py](https://github.com/google/neuroglance…
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Currently, reading NRRD file doesn't pick the metadata related to segment names and colors that are saved in a slicer compatible NRRD segmentation. It would be a good idea to support this metadata by …
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**AIMS**
- Reconstruct images from 2D patches
- Run inference on microscopy data
**Preliminary questions**
- Deal with patch overlap for inference
**UPDATE**
- The loading of microscopy data…
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### What feature or change would you like to see made?
Hello!
Currently cornerstoneNiftiVolumeLoader cannot load nifti files with datatypeCode = 2 (uint8): it throws the following error:
`8 Bit s…
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It is really great work of this repository.
I just wonder could you provide the detail code which convert dicom or nifti file( or any file format) to HDF5 format. It is really helpful for me to con…
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Currently we are writing nifti by going through dicom format, which is problematic because of re-normalization.
Suggestion: write a function that would write nifti directly, with json that woudl in…
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i want to create an 3d Nifti Image Format Viewer ,it is possible to do that using the Nifti.net library if yes how can i convert the NiftiFile.Read(path); result to a 3d Bitmap
Thanks in advance