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Hi everyone,
first of all thank you for providing this tool to the public.
I tried to run the `brats-segment` script from the command line on my Ubuntu 18.04 virtual machine:
`brats-segment -…
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I have a unique case stemming from a modified version of [`ds002156`](https://openneuro.org/datasets/ds002156). I basically took the first echo from a multi-echo run and removed the echo entity to sim…
tsalo updated
2 weeks ago
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Hey,
I'm trying to run the following in terminal. I'm in my subject folder, and all of my paths are correct.
nifti2dicom -d ./DICOM/PA000001/ST000001/SE000001 -n ./bids/derivatives/sub-iai343y_ses-2…
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I initially thought that it might be more of interest to OpenNeuro itself, but then decided that it better be addressed at the validator level.
Look through .bidsignore files among OpenNeuro data…
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Hello "nnUNet_plan_and_preprocess -t 1 --verify_dataset_integrity" An error occurred while using this command.
dataset.json
# ID, name, file
0, T1-weighted template, templatedog_t1w.nii.gz
1, T2-weighted template,…
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@neurolabusc
Hi,
Years ago I tried nii_sliceTime.m to correct slice timing on multiband data. I'm trying to reproduce that, and running into problems:
```
>> nii_sliceTime('sub-001a.nii')
…
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the `./data/abdominal/CHAOST2/png_gth_to_nii.ipynb` file for preprocessing of T2SPIR dataset is missing.
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GaNDLF produces metrics that are different from our official inpainting package (https://pypi.org/project/inpainting/).
To compute metrics with the official package:
```
pip install inpaintin…
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I'll find time to expand on the issue desc and provide minimal example to rep.
`RegionExtractor(["image1.nii", "image2.nii"], threshold=3.)`
Throws error:
```
ValueError: threshold given as ratio t…