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cytoscapeVersion 3.6.1
apiVersion v1
```cy = cyrest.cyclient()
networkname = 'SampleNetwork'
network = cy.network.create_empty(name=networkname)
cy.network.set_current(network=networkname)
…
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```
In [1]: from py2cytoscape.data.cyrest_client import CyRestClient
In [2]: cy = CyRestClient()
---------------------------------------------------------------------------
JSONDecodeError …
kozo2 updated
6 years ago
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sys.path.insert(0,"/home/user/.local/lib/python2.7/site-packages/py2cytoscape-0.6.2-py2.7.egg/py2cytoscape")
import cyrest as cyrest
# Step 1: Create py2cytoscape client
cy=cyrest.cyclient()
cy…
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I tried to control (cyREST + Cytoscape 3.5.1 [Java SE 8u131]) from Bash on Ubuntu on Windows.
## The error, and how to reproduce it
```
In [1]: from py2cytoscape.data.cyrest_client import CyRestC…
kozo2 updated
6 years ago
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I'm trying to set styles using py2cytoscape on a Cytoscape instance running on another url than http://localhost:1234. The CyRestClient provides a way to enter a custom ip/port, but the styles seem to…
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I'm looking over the code in base.py and there's a few things I noticed about error handling, particularly linked to the code here: https://github.com/cytoscape/py2cytoscape/blob/61fcae356c611bd9df770…
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For large networks, cytoscape is not creating network views and, therefore, no image is possible to be downloaded.
If clicking in the "create view" button in cytoscape, it works as expected.
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Hi there, I tried to list commands from py2cytoscape as shown in docs:
```python
>>> from py2cytoscape import cyrest
>>> cytoscape=cyrest.cyclient()
>>> cytoscape.commands.list()
```
but I a…
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I've created a [compliance table](https://github.com/cytoscape/py2cytoscape/wiki/swagger-compliance)
@AlexanderPico it would be great if you could add the RCy3 part and add new rows as necessary
…
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- basic structure for documentation of new function as one goes along
- full docs will be added once decision is made on which functions to deprecate