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**Are you using the latest release?**
Yes
**Describe the bug**
I have switched to mysql from sqlite because sqlite takes so long to run. Train keeps failing at the PASA step, due to an inability …
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Hello,
I am currently trying to run finder on three whole genome samples:
1. Sequenced with Illumina HiSeq x ten
2. Sequenced with Illumina Novaseq 6000
3. Sequenced with PacBio SMRT
Samples…
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I've experienced a memory leak when using the python `mappy.Aligner` when initialized with a sequence file/FASTA (this is within [Megalodon](https://github.com/nanoporetech/megalodon)). This same memo…
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### Description of feature
Adding 2 classifier approaches
Centrifuge and metaPhlan2
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Hello,
I tried a multitude of alignment options with a bunch of aligners. I was finally able to find one which can map reads to micro-exons. I fed these alignments, along with the alignments of oth…
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We may need to do an after-magicBLAST cleanup, where we extract the reads and pairs back out of the original SRA. Duplications and unpaired reads may be throwing off the aligners. Unpaireds may be i…
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Hi, maybe I missed this, but which aligner is recommended ? STAR or Tophat, or bwa, bowtie2 etc.
Thanks,
Colin
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Is my alignment file wrong? QoRTs.jar was executed in windows platform.
E:\junse>java -jar QoRTs.jar QC SAMP1.bam Bom7.gtf /output/
Starting QoRTs v1.2.42 (Compiled Fri Jun 2 12:23:55 EDT 2017…
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I believe that fastp would improve the current align-DNA pipeline and workflow.
fastp is an all-in-one FASTQ preprocessor. It performs read filtering, base correction, quality control, and adapter …
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Hello, thanks for your time and patience! I just want you to know that STAR is amazing! I've been working with Chimeras in RNA-seq in my Ph.D. and I have questions that I hope you can help to give me …