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barrnap version 0.7 was used for annotating the same draft genome sequences. DDBJ commended on 16S rRNA sequences at contig boundaries. For example of a contig with 1330 bp,
```
rRNA complement(37..1…
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Dear Torsten,
not sure if this has anything to do with you directly, but I just noticed that the barrnap-v0.9 version packaged for Debian/Ubuntu (installed via `apt`) is shipped with what appears t…
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Hey, hello! I’m a bit confused about why I’m getting errors even though I’m using the same db file. Could you please help me take a look?
When constructing the index, I used the same db file, and bas…
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Basic `customNumbering` is being handled in this PR: https://github.com/eternagame/EternaJS/pull/195/commits
However, it would be best to include & display additional information with `customNumber…
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Hi! I had this issue:
```
time VirID assembly_and_basic_annotation -i SRR1007830
5_1.fastq -i2 SRR10078305_2.fastq -out_dir virid_output --threads 24
[2024-10-01 11:41:45] INFO: VirID v3.1.0
[…
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Currently the progress prints with formatting to highlight the read counts. Could you add an option to remove this formatting so that the output log files are readable? This may be related to #33
…
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Hello Mikaells,
I was wondering if you had any thoughts on how to expand RibDif to accommodate different rRNA regions? Specifically, I would see great advantage in being able to explore the 16S-ITS…
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Hello
Could you please let me know if it is available for the 16s rRNA microbiota dataset?
Cheers
Marwa
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Hi @wegnerce ,
Im currently working on metatranscriptome of plant samples as well and i've been referring to this amazing work for as a guidance for my bioinformatic analysis. Im very new to all bi…
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To start with, I think there might be a confusion between enzymes that install methyl groups at adjacent nucleotides, and enzymes that install two methyl groups on the same N6-adenine. Only the latte…