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Is there a way to increase the visibility of SNPs at wider views? In the example below, I can see SNP differences between alignments in a 56 kb window, but not in a 140 kb window, which encompasses th…
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Is there a way to include multiallelic loci in the binary genotype data. I tried to do the following:
binary_matrix
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Hi,
I am trying to run the MAGMA.Celltyping::celltype_associations_pipeline with the following code:
```
MAGMA_results
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For the 100 SNPs debugging, what we want to do is first run a simple 100 snps through the model using a classical learned positional embedding. If that provides promising results, we can try to do t…
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hello，When I used data with Visium for fresh-frozen from https://www.10xgenomics.com/cn/datasets/fresh-frozen-visium-on-cytassist-human-breast-cancer-probe-based-whole-transcriptome-profiling-2-standa…
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Hi,
I am using locuscomparer to visualize colocalization results, but the SNPs I draw with the R package are not the same as the colocalized SNPs. Could you help me with this? Thank you!
ghost updated
5 months ago
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Hi MESuSiE developers,
Thank you for developing such a powerful tool for fine-mapping across multiple ancestries. I have two related questions that I hope you could help me with:
Handling Multip…
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I encountered this error when running PRScs-auto during the MCMC step for chromosome 1. The previous steps seemed correct, as it printed `22925 common SNPs in the reference, sumstats, and validation s…
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Thanks for your tool - looking forward to using it on our dataset.
The output logger reported:
```
Imputation processes started at Tue Mar 15 16:43:04 2022.
1349 SNPs used for training.
1013…
sahwa updated
2 years ago
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Hi,
Regarding the highlight script given in the manual:
SNPs