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Dear Author,
I have used your example dataset, burkhardt21, for analysis, and I performed variable filtering with the following code:
fs.pp.determine_informative_variables(adata,
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### instillations
- install VS Code (recommended) with extensions Python, ...
- install git (use bash)
- install python
- set port values
- clone repo
### project setup
- install packages
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Hello SPROD author!
Tools like Tangram or gimVI can utilize scRNA-seq data to predict and impute spatial data, but they seem to be unable to denoise contaminated data. Therefore, I am considering u…
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### System details
RStudio Edition : Desktop
RStudio Version : 2022.12.0.353 Elsbeth Geranium
OS Version : Ubuntu 22.04
R Version : 4.2.2 Patched (Innocent and Trust…
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Hi,
Thank you very much for developing such an excellent tool for cell communication, especially for the spatial transcriptome.
I am recently using cellchat to analyze the interaction of sp…
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I'm trying to run a simple preprocessing pipeline for 3 different runs, two resting state and one main task. However, the pipeline fails at a step where the covariance is calculated, which I set to "e…
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We have two arms of dataset curation. One is to use existing Synapse resources like manifest.csv and/or Wikis and/or tables to create dataset metadata; let's call this the internal arm. The other is t…
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Thank you very much for your research in the field of CNA analysis. I have encountered some issues while using CalicoST. When I executed cellsnp-lite with three samples (10x Genomics Visium v2), the o…
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## Describe the New Feature ##
Create a new statistics tool named Pair-Stat to compute statistics for already paired forecast and observation data. The initial version of this tool should support the …
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Find the Hot Singles in your area using GIS
https://www.geographyrealm.com/finding-love-using-gis/
https://carto.com/blog/spatial-analysis-for-dating-apps
the idea is to map where the people who …