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Working with Pileup.js, we observed, that the gene track shows the gene annotations at completely wrong genomic locations.
Here the steps to reproduce the issue:
Your example page at http://www.ha…
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Hi @cmdcolin this is great work! Two questions:
(1) is it possible for the user to interactively add/update highlights? (as in apollo)
(2) is it possible to display a peak model on top of the da…
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I am using this stylesheet to display bed tracks : https://www.biodalliance.org/stylesheets/gencode.xml
The rows in the bed tracks have colors that are not honored by the browser, I suspect that…
max-l updated
7 years ago
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Dear all,
I would like to know if there is a way to properly visualize methylation information obtained from modkit in IGV genome browser (testing IGV 2.17 snapshot).
In particular, I ran Dorado wit…
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Hi!
How easy/seamless is it to add community contributed plugin track? Are there any examples/demonstrations available?
Thanks,
Parul
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@cschlaffner :
What is the possibility to implement the quantitation export into a bigwid https://genome.ucsc.edu/goldenpath/help/wiggle.html
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Hi,
Sorry it might be a naive question, but I cannot find a way to overcome it...
I am trying to install your pipeline. I think I have installed all required database/softwares, however, I got the f…
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When I am using a file option with -genes both on local HDFS it does not work. If I use http it works.
My question is what are supported protocols for -genes?
**Does not work:**
/home/sm/mango-dis…
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Receied this error when loading a bigbed file. Surprises me as I was already able to load some other bigbed files.
Stacktrace says:
```
TypeError: Cannot read properties of undefined (reading 'ta…
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Hi @dpryan79, various people e.g. @diekhans and @mrvollger have asked if there was a conda package to install all the kent tools. I don't know how to figure that out. Maybe there is already a meta-pac…