-
Results in a warning message.
-
Dear sir,
I ran sacrHRD normally untill recent months.
The error message below:
Is that the R vers…
-
Hi,
I tried to build a gCNV model and got the error `python exited with 139` but can#t figure out what is the cause of this error. Can you please help me with that error message? I attended the who…
-
We'll need to have this in place to more easily showcase the FacileData API.
Some choices could include:
* The [ROSMAP](https://www.synapse.org/#!Synapse:syn3219045) project. This may be ideal s…
-
Hello,
I'm trying to use the CNVGermline Pipeline with Nextflow and a GATK Singularity image pulled from your Docker image.
As you can see, I'm trying to run the DetermineGermlineContigPloidy w…
-
Hello,
I'm using the tool Control-FREEC to evaluate the CNVs in my data, but I have some doubts about the _ratio.txt file given in output.
As far as I understood by both the paper and the docume…
-
Hi
I have `tumour only (WGS)`, from `human cell line` (24x)
I get this error
```
> res
```
Please could you help me with this error
```
> sessionInfo()
R version 4.4.0 (2024-0…
-
https://github.com/PapenfussLab/gridss
-
Hi!
I'm wondering how to use the new GATK4 copy number segmentation as input to TITAN. I guess it should be possible (see eg. https://software.broadinstitute.org/gatk/documentation/article?id=11088…
-
Dear GATK developers,
Thank you very much for the tool! I recently encountered an issue while running GATK gCNV, specifically with the step GermlineCNVCaller in cohort mode. I ran the workflow usin…