-
Thank you so much for your fast response to the previous issue. I am currently applying the GIFT_summary function on a real data example. The true causal gene should be gene4. The input for GIFT_summa…
-
Because it depends on Genotype-IO-0.4 which cannot be found with the current source.
-
which tissues tend to share eQTLs more than others? are these also the tissues
showing greater similarity in their raw expression data?
possible plots/analyses include:
- heatmap showing pairwise sim…
-
Hi,
I am interested in identifying significant eQTLs given _n_ phased SNPs and _m_ genes with allele-specific reads.
I studied the `get_target_regions` script, which doesn't have the option of s…
ghost updated
4 years ago
-
one issue I'd like to know is do "tissue-specific" eQTLs tend to be for genes that
show tissue specific expression
patterns. One way to do this would be an Rqtlchart where the top panel shows express…
-
Hello! I am currently working on eQTL fine-mapping analysis with susieR. I have already mapped eQTLs and performed conditional eQTL mapping with QTLtools, which provided me the summary statistics dat…
-
Hello,
We were hoping to leverage your database in an MR analyses but were unable to find the complete scQTL summary statistics. I only see the significant relationships presented.
Thank you,
-
@hangsuUNC Run HiPhase on whole genome using current parameters with no filtering for all samples:
- [x] Break out a per-sample workflow from the current PhysicalAndStatisticalPhasing workflow. This …
-
we should look at our results for that eQTL, see what they look like.
The results are in Figure S14, and the SNP is rs37055 the gene is NDRG4
and the pilot data suggest this snp is much stronger eQTL …
-
Hi, I'm new to population genetics and I'm currently using OTTERS for TWAS analysis and I have obtained the following result files: lassosum.txt, P0.001.txt, P0.05.txt, PRScs.txt, and SDPR.txt.
My …