-
Hi Ryan,
Do you have plans to implement a graphical way to visualize e.g. a contig as a line that goes along multiple nodes? e.g. using CSV information.
-
金老师您好，我在组装叶绿体时遇到了不成环的情况，按提供的建议优化以后，依旧不成环，想问下您的建议，07-3.log文件和07-3fastg图片，是增加了-w参数，增加了--reduce-reads-for-coverage=1000以及近缘参考序列，而07 -s.log文件与07 -s fastg图片是常规参数的，只加了一个近缘参考序列。谢谢老师！
[07-3 get_org.log.txt](…
-
I am analysing some freshwater metagenomes and we really have no idea what to expect when it comes to plasmids (ie size),
I am somewhat stupidly stuck on the "first" sample which takes a very long…
-
Using image: `quay.io/biocontainers/shovill:1.1.0--0`
Run with default options
Error message:
```
[shovill] Correcting errors in spades.fasta
[shovill] Running: pilon --genome spades.fasta…
-
Error in console:
```
[73/c51673] NOTE: Process `wPipeline:_wAggregate:wCooccurrenceList:_wCooccurrence:pBuildNetwork (1)` terminated with an error exit status (1) -- Execution is retried (1)
[e8/8…
-
Hi, there
I tested circlator with test command and it worked perfect. However, when I entered the following commands
circlator all --verbose --threads 8 --merge_min_id 85 --merge_breaklen 1000 96200…
-
Hello,
I am assembling a fungal genome (about 50Mb) using Spades. I tried lots times. I met the same errors. Could you help me check what it happen? I have attached my log file and parameters file.
…
-
I'm using SCAPP as part of a snakemake workflow, on Flye --meta assemblies of ONT reads, after converting the assembly_graph.gfa to fastg format. For some datasets, it runs perfectly fine, but for oth…
-
```
0:00:00.000 4M / 4M INFO General (main.cpp : 76) Loading config from /scratch/mygenome__SPAdes3.11.1_noecc_ramdisk/K55/configs/config.info
0:00:…
-
Hello and thanks for the self-contained, all-in-one super tool!
I have generated a database using `phyloFlash_makedb.pl` based on 16S sequences extracted from genomes as follows:
```
phyloFlash…