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Hello,
Would it be possible to include the mm39 genome in the preProcSample in the R facets?
Thanks in advance,
Karolina
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Hello! I've been trying to use your software, but I only ever see global CNV changes - no hint of single cell changes.
I've tried changing the windows size between 1e5, 5e5, and 1e6, the minFrags …
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Currently, the pipeline may skip calculating GC content if it cannot find the associated BSGenoma package in the namespace. Unfortunately, it does not log this and silently skips attempting to calcula…
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# 📇 User story
As a GC Design System user I want to be able to see and download HTML templates for common basic page templates.
# 📜 Acceptance criteria
- [x] Prior to doing work, clarify scope of ti…
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### Bug description
https://github.com/user-attachments/assets/87904f17-9eed-47f1-9c3b-61857cf6bc49
### Version of ReVanced Manager and version & name of app you are patching
ReVanced Manager…
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Hi ! I'm using cnvnator to call CNV with my WES data.This is the command I use:
```
cnvnator -root sample.root -tree sample.bam -chrom $(seq 1 22) X Y -genome hg19
cnvnator -root sample.root -his…
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Hi, I'd like to use FREEC without control to detect CNV in goat genome. I prepared my chromosome lenght file (goat_chr.len), my GC_content file, without mappability using bedtools on goat genome (exam…
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## Description
As a recipient of a GC Notify text message, I need to be able to opt back into receiving messages using a keyword so that I have control over what messages I receive from the GoC and so…
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My Kopia gc produces this error:
```
$ kopia maintenance run --full
Running full maintenance...
Looking for active contents...
ERROR error processing pc2/ddb/4433c77447b39eebc0598b94927-s21395e…
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Using `--gc:arc` or `--gc:orc` with `ropes` produces a segmentation fault at values of `Limit` >= 524k, but `--gc:none` and `--gc:refc` do not.
### Example
```nim
# ropetest.nim
import std/rop…