-
From Rosemarie.Sadsad [...] health.nsw.gov.au on CPAN.
Hi,
I am running Bio-Roary v3.7.0 as part of the Nullarbor pipeline, however the accessory_binary_genes.fa produced is empty.
0 Dec 8 2…
-
I'm using Linux Redhat and am simply trying to run the tutorial with the test data set. Any tips or help will be much appreciated. The following is the command I entered and the resulting error messag…
-
Hello,
I am using this script on an Unzipped assembly (1.3 Gb in total) with default settings (50% of bases to be out). The resulting fasta has many less sequences (5449 vs 7905) and only 65 Mb less …
-
Hi Matt,
When trying to retrieve hundreds thousands of genes from thousands of sequences the enormous directory structure created by HybPiper very quickly exceeds capacities even of big clusters. T…
-
https://bioentity.link//#/publication/10.1534/genetics.119.302777
-
These genes have had revised structures which means that they
These genes do not have signal peptides because the sequence does not match the UniProt sequence at the N-term.
https://www.pombas…
-
hi all
Any advice will be greatly appreciated.
I am looking at a bunch of bacterial genomes and there are certain genes that seem to slowly dissapear from isolates that were collected at a late…
-
Hello again,
I am running 90 days now Orthofinder for 30 species. Yesterday my job killed in the gene constuction step (raxm-ng).
So, is there any solution to rerun orthofinder again from this st…
-
Hi, this is a great pipeline, and I am finding it useful for multiple datasets. I have two questions regarding the cleaning step:
1. Is there an option to remove PCR duplicate reads from my FASTQ fil…
-
Hi! I just first wanted to say thank you so much for developing this package. It is quite handy and overall greta resource for so many. I've been using the blasts comparison to confirm some previous c…