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Hi there Alexey and team,
I tried to run a site-ID and TMT quant analysis on some files, which went well up until the TMT integrator part. Not sure what went wrong here - can you help?
Log is as…
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1) GitHub unreachable for the moment, can't check for versions right now.?
2) A meta data folder was found and will not be overwritten
3) The current Workspace is corrupted or was created with an ol…
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Hi, I'm following the pipeline for TMT analysis tutorial to perform an analysis on files which I have converted to mzML from raw using MSConvert on linux. I am getting the following error at the Pepti…
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To test suitable imputation approaches for missing quantification values in a given proteomics experiment, it's usually beneficial to start by simulating missing values. When considering MCAR, simula…
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Hi,
So I followed the exact instructions in the README file to install it. However when I run this workflow, I get the following error:
```
./nextflow run ipaw.nf --tdb VarDB.fasta
--mzm…
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@hbarsnes @mvaudel @StSchulze
We have continued working with the metadata experimental design.
See example, https://github.com/PRIDE-Archive/pride-metadata-standard/tree/master/experimental-des…
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**Describe the bug**
Running RawTools on Linux (CentOS 7) I get an error in the command line.
**Description of raw file**
None.
**Command line arguments**
```
mono /projects/ptx_analysis/…
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It happens not rarely, that the (Thermo) instruments software determines an incorrect charge state for a particular precursor.
It has been shown in the past, that this misassignment leads to a reduce…
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Hi Laurent,
Can readMSData reading more than two files be ran with parallel? It should be very useful to reduce the time when reading multiple files.
How do you think?
Best regards!
Bo
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Hello,
I am trying to convert some mass spectrometry data stored as mzml files (but also mgf, dta, dta2d, ms2, fid, peplist) to CSV. [mzml -> CSV]
Reading the FileConverter executable help (availabl…