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## `README.md` with commands and analyses
**2/2**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
| Commands for Step 1.1 | 0.33 | 0.33 |
| Commands for Step 2.1 | 0.3…
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Hello,
I'm reading through the documentation for qmplot and making a Manhattan plot. Very useful!
I was wondering if it's possible to decrease the marker size. In ax.scatter(), I can normally a…
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Hi,
I was wondering if there is any way to incorporate the output from Scoary into phandango for visualization. As far as I understand, phandango requires a Manhattan plot format for GWAS data htt…
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Dear All,
Thanks for the great tool. I would like to add the tools for manhattan and Q-Q plot as command-line executables in the next flow pipeline I am developing. I am was searching through the `st…
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Hi,
Thanks for this great tool.
So, i generated a Manhattan plot for my population using 99.9% as a threshold.
Can you please assist in interpreting the threshold? Eventhough it is 99.9%, it sti…
foala updated
2 years ago
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how to change color palette in the Manhattan plot
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When plotting the Manhattan plot, chr 23 turned into "X" label. Thus it is not suitable for ploting other species. Would you fix this issue?
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Hi YinLiLin and everyone:
I have plotted manhattan and qq plot by using CMplot, and I also have noticed the manhattan and qq plot have different bold styles of axis ticks like that:
![total ass…
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Python version: 2.7.5
Package version: 1.7.2 (16 Mar 2016)
OS: CentOS Linux release 7.3.1611 (Core)
Exception:
$ manhattan_generator --twopoint /data/Scott/sylvia_smc_ec/sqtls_smc_covars.t…
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Hi!
Thanks for this nice package. I'm trying to make some multi-trait manhattan plots (for eQTL results), but have run into issues whilst practicing on single-trait plots. My plot without highlightin…