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Hi,
I am trying to convert tiff images into the required nifti format using the following function:
https://github.com/MIC-DKFZ/nnUNet/blob/06505439d5e3239105c867c6b380a95f44090431/nnunet/utilit…
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There are some great workflows to convert a directory of dicoms into a BIDS compliant format. However, the source dicoms remain identifiable which limits the ability to share source data. At our insti…
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### Summary
I'm attempting to convert some data from a Siemens Vida running XA20 and producing enhanced DICOMs. I followed the example [here ](https://neuroimaging-core-docs.readthedocs.io/en/l…
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Gist of dicom data in python
https://towardsdatascience.com/dealing-with-dicom-using-imageio-python-package-117f1212ab82
Gist of NIfTI data in julia and python
https://brainder.org/2012/09/23/th…
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Hello!
I just read the paper and it is definitely really great work!
I have a quick question about the format:
I only have the Dicom format file, is there any way that I can convert it into NIFTI…
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Especially for specific data formats like nifti
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- I am trying to convert Bruker CSI data to Nifti. Everything looks OK, except for the excited CSI grid. How I can store it in Nifti? Do you think it is possible? should I use a sidecar file like json…
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Hello together,
thank you for your repository. It seems to work well for extracting .vol data.
We plan to export our data to another file format such as Nifti, Dicom or raw/mhd. Are you aware o…
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- [ ] download the ADNI atlas in `analyse` and `minc` format
- [ ] convert ADNI atlas to NIFTI image
- [ ] try to plugin the atlas into the preprocessing pipeline
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**Is your feature request related to a problem? Please describe.**
We have moved away from nifti files for our routine operations due to the ambiguity of their handling in different pieces of softwar…