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Given that our [MIRTK/Viewer](https://github.com/MIRTK/Viewer) is in maintenance mode (and not working with MIRTK yet), it might be a good idea to integrate most commonly used MIRTK tools into other i…
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Only happened for sub-sc002:
> sub-sc001: 07:21:45 succeeded
> Node: fmriprep_23_0_wf.single_subject_sc002_wf.fmap_preproc_wf.fmap_reports_wf_auto_00001.fmap_rpt
> Working directory: /scratch1/03…
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### What happened?
Running fMRIprep with pre-computed freesurfer output using -hires and -expert options flag in recon-all makes fMRIprep crash at autorecon1 stage
### What command did you use?
```…
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About half the subjects produced errors like this:
> Node: fmriprep_23_2_wf.sub_18_wf.fmap_preproc_wf.wf_auto_00006.brainextraction_wf.n4
> Working directory: /node_tmp/work_dir/fmriprep/ds002169_…
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### Script/Job File
```
#!/bin/bash
#$ -pe smp 16
#$ -q UI
#$ -m bea
#$ -M adriana-rivera-dompenciel@uiowa.edu
#$ -o /Shared/vosslabhpc/Projects/CREST/code/fmriprep/out/
#$ -e /Shared/voss…
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### What happened?
I'm using `smriprep 0.16.1` coupled with `fmriprep 24.0.1`. I was attempting to break the workflow down into steps for greater control on when things were ready. My data are multi-…
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### Description
Develop a convertor script to convert Nipype workflows to Pydra workflows
### Benefit Hypothesis
The convertor script can correctly convert Nipype to Pydra Workflows without the need …
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### Script/Job File
```
#!/bin/bash
#$ -pe smp 16
#$ -q UI
#$ -m bea
#$ -M adriana-rivera-dompenciel@uiowa.edu
#$ -o /Shared/vosslabhpc/Projects/CREST/code/fmriprep/out/
#$ -e /Shared/voss…
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With our recent Siemens software upgrade and move to enhanced dicoms we expected some issues, and here are the ones I've seen so far.
1. the cfmm2tar filename pattern, specifically the study instan…
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Hello,
after processing my data using Freesurfer and trying the ACT-hsvs pipeline, I get the following error:
```
[Node] Error on "qsirecon_wf.sub-xxx_mrtrix_singleshell_ss3_hsvst.anat_ingress_wf…