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We should also add a prompt to the command line version to ask (or check) is the data is single shell or multishell. This impacts the amico_noddi step (that should only be run on multi-shell data) as …
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Below we can have a detailed proposal for how to approach #35. We know there's going to have to be some canonical representation of objects as either in-memory or on-disk, and "in-memory" seems prefer…
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I managed to install mdt via docker on a Centos7 server. I tried to fit this model on HCP data and fitting is very fast (about 6 minutes per subject). However, something goes wrong since NODDI maps lo…
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Dear developers,
I'm running the containerized version of NODDI toolbox following the instructions reported here in the Read Me section. I tried first with the NODDI example dataset, as follows:
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Apologies if this has already been answered, I hadn't seen another thread on this.
I'm new to NODDI, but I have been running AMICO NODDI to speed up the process on paediatric healthy controls (ages…
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- Understand well what Slicer and SlicerDMRI already can do.
- Think about how that affects the design of our Slicer modules
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I did a survey myself in July 2023, here is my summary.
Slicer has a…
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Hello, I was rerunning AMICO NODDI on the same data set and I noticed there was an update. I was wondering if there is anything I need to do on my end to regenerate the output images as before. I am n…
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Hello,
I am trying to get started with MDT and using NODDI but the documentation and README files are not working. Can we get a reference to get started.
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Hi!
I'm trying to run NODDI with AMICO but it gives me an error when it arrives to the fit.
I attached a screenshot with the error (both using 1 and 8 threads).
Can you help me?
Thank you in advan…
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Here is some feedback on 64 gradient directions (b=1000mm/s^2) and 1 b0 data I have without the opposite phase encoding direction.
See below the gm_norm, wm_norm, and csf_norm data.
![Screen Shot…