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Hi!
I have a couple of issues/questions, for which I can't seem to be able to find an answer browsing through everything.
1) I am using plot_ordination to generate an NMDS plot on my data, I wou…
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Dear Developer team,
Many thanks for building such a fantastic software, however I have some question regarding my pseudo time analysis.
Currently I am working with a Seurat object from a TNK …
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I am getting an error of `Error: Error in analysis(x): object 'splits' not found`
Splits and Features:
```r
splits %
step_normalize(contains("index.num"), contains("date_col_year"))
recip…
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### Describe the bug:
PCA environmental contours returning odd results when Tp is used as the period value (rather than Te)
### To Reproduce:
This is just a slight modification to the code in…
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The [Python](https://github.com/NEONScience/NEON-Data-Skills/tree/main/tutorials/Python) tutorials (many written for the 2017 and 2018 RSDIs) use different versions of functions for reading in reflect…
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These clusters could then be used in survival curves and other analyses.
- [ ] Separate based on user-created line (maybe validated with Fisher's exact test)
- [x] Separate by k-means / PAM / CLARA
…
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To set reasonable parameters for the t-SNE visualisation in the online app, we need to assess the hyper-paramters on all (or many) dataset. An example of how to do this is shown in the vignette. In a …
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Hello, @saeedakbar
Thank you for your amazing work, I would like to know how can I control PCA components in the code. as the paper mentions that we can control the root velocity, hand trajectory, a…
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Hi,
I am working with a very larger sc/sn RNA-Seq dataset. Starting from an h5ad file have used BPcells package to load data in-memory as follows:
`raw