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It would be great if 5-(2-aminoethoxy)methyluridine could be added. It is a hyper-modified base in _Salmonella_ phage ViI, discovered in: [Lee, et al. (2017). Identification and biosynthesis of thymid…
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It would be great if 5-(2-aminoethyl)uridine could be added. It is a hyper-modified base in _Pseudomonas_ phage M6, discovered in: [Lee, et al. (2017). Identification and biosynthesis of thymidine hyp…
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Hi, I am trying to detect integrated plasmids in a single sequence (working with a test genome). I get a single hit in the `contigs_report.txt` file, but the fields for "contig_match_start" and "cont…
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I uploaded the WoRMS dump to Arctos and pulled off names which won't fit under our rules. There are 211009 unique names which (based only on format) seem like they might be real names and which are no…
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### Summary
- What does this package do? (explain in 50 words or less):
_The restez package downloads all or sections of GenBank and creates a local SQLite copy of the database for querying. T…
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We need to determine the best way to identify a reference species based on the assembled sequences (`contigs.fa`). Current ideas have touched upon MASH, but also Jspecies, etc. Still no solution.
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it looks like we need a generic mass spectrometry term for interaction detection in order to annotate experiments that do identify interactions but in a way different than the current definition of 'm…
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I love how data.table by default only prints the first and last 5 rows of a long table.
However I often encounter data with columns with very long strings, which destroys the whole effect.
best- Jan…
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it looks like we need a generic mass spectrometry term for interaction detection in order to annotate experiments that do identify interactions but in a way different than the current definition of 'm…